HMM Import

HMM (Hidden Markov Model) will be incorporated into the feature/gene annotations and the lists system in ggKbase, so that ggKbase can create a genome summary with HMMs.

The process of importing HMM annotations include the following.

1. Users run their HMMs using tools like hmmsearch outside of ggKbase.

2. Generate a HMM output file in the following tab-delimited file format, including the header. NOTE: The columns with bold column headers are required.

Ex: K00001project_bin_scaffold_1_1project_bin801.00e-12{hmm_length: 36, hmm_sd: 45}

3. Submit a ticket to to request a HMM annotations import.