At NCBI related BioProjects can be subsumed under a single umbrella project. For example, all Rifle-related project are associated with the Rifle umbrella project (BioProject ID PRJNA217089).
For reference, here is a full list of project submissions under the Rifle umbrella:
| BioProjectID | ggKbase equivalent | NCBI project type |
| PRJNA263282 | Long read Moleculo data of a 5m / 16 ft sample from terrestrial sediment (Itai) | Genome sequencing |
| PRJNA114691 | Rifle ACD (Kelly W.) | Metagenome |
| PRJNA268031 | GW2011 12 Groundwater samples | Metagenome |
| PRJNA167727 | Kim Handley (?); Laura’s submission of RBG-2, 9, 1351 and Chloroflexi from 3 depths is associated with this (RBG project) | Metagenome |
| PRJNA262935 | Rifle 16ft 4 Metagenome (Laura; submitted by JGI) | Metagenome |
| PRJNA217186 | Candidatus Saccharibacteria bacterium RAAC3_TM7_1 (Rose) | Metagenomic assembly |
| PRJNA216121 | Parcubacteria bacterium RAAC4_OD1_1 (Rose) | Metagenomic assembly |
| PRJNA217185 | candidate division SR1 bacterium RAAC1_SR1_1 (Rose) | Metagenomic assembly |
| PRJNA217183 | candidate division WWE3 bacterium RAAC2_WWE3_1 (Rose) | Metagenomic assembly |
| PRJNA208744 | candidate division ZIXI bacterium RBG-1 (Cindy) | Metagenomic assembly |
| PRJNA268032 | Reconstruction of novel archaeal genomes from metagenomic groundwater sample (Cindy) | Metagenomic assembly |
| PRJNA269172 | Rifle Groundwater ribosomal proteins for Archaea | Targeted Locus (Loci) |
| PRJNA169373 | Registered 26-Jun-2012 (?) | Targeted Locus (Loci) |
| PRJNA763246 | Rifle Groundwater ribosomal proteins for Archaea (Cindy) | Targeted Locus (Loci) |
TODO:
- add better descriptions to some of the older projects to better distinguish them
- add other 2 Moleculo projects under Rifle umbrella (Genome sequencing project type) — PRJNA263279 (4m / 13ft; also needs title changed) and PRJNA263284 (6m / 19 ft)
- submit Rifle ACD contig-to-bin lookup to fix lack of specificity of taxonomy hits against “sediment metagenome”