2 articles Binning

Binning tools and procedures for metagenomic data

Binning Tools and Procedures

After a new project is loaded in ggKbase, a metagenome bin is created to contain all the unbinned genomes. In order to identify individual organisms from the metagenome bin, we use the binning tool to group contigs of genes based on their coverage, GC content, and phylogeny. This tutorial uses the Borehole JP project to demonstrate the binning process.…

Curated Genome Import User Interface

Genome curation is manual process for improving the genetic sequence of a bin with the end goal of producing a single, circularized, and complete genome. Often times, that ideal cannot be reached, but curation is still important for fixing assembly errors and generally improving the structure of a given bin. The curation process takes place outside of ggKbase…