Backend update
Seth: Set up the local server and started to measure the system slowdown.
Genome summary
Kai: Demonstrates the genome summary visualization. Parallel coordinates for filtering.
Brian: Connect to the Kegg pathway map to drill down to the presence and gaps of genes.
ACTION ITEM: Provide them color assignments/palette for taxonomic information. Need to point them to the database.
ACTION ITEM: Metadata for the lists, such as taxonomic information and other types of information
Onsite visit
Emily: Stamen needs to have internal meeting to set the time.
Zan: Thinks that it will be useful.
Brian: Has lined up 5 researchers in Berkeley.
Emily: 4/19, Tuesday, 10-12 or 4/21, Thursday, 10-12? Need to nail down the time.
Gene analysis tools
Kai: Asks for a list of tools that are popular in the lab for doing genes analysis
Brian: Circos, Geneious, Excel
Interacting with large dataset
Brian: A larger question – How best to visualize the large amount of data in tabular format.
Kai: Seth will check out the performance
Zan: It depends on the goals. Use less space to show more information in a meaningful way.
Kai: Workflow is challenging. Needs a UI workflow.
Seth: What’s the important thing to get out of it? Importance of the numbers? etc…
Lists
Brian: How to add more lists????