Keep track of notes from collaboration with Stamen
Development server setup Lead: Seth Development server: It’s all set up by haven’t played with it yet Data model: Seth wants to figure this out on his own, but Brian encourages him to ask questions Instrumentation: Not yet done Genome summary Lead: Kai and Zan Current problem Significant slow down around 100 rows Suggestions Rendering the graph…
Backend update Seth: Set up the local server and started to measure the system slowdown. Genome summary Kai: Demonstrates the genome summary visualization. Parallel coordinates for filtering. Brian: Connect to the Kegg pathway map to drill down to the presence and gaps of genes. ACTION ITEM: Provide them color assignments/palette for taxonomic information. Need to point…
Tech team Greg: Getting into the Thinking Sphinx code. Greg: Instrumentation is on the table, but hasn’t done it yet because he has figured out the slowdown with instrumenting the system. Seth: Looking into using ElasticSearch as a replacement for Thinking Sphinx Design Team Zan: A summary of what the design got out of the…
Demo of the new genome summary by Kai and Zan: Lighting up more rows as we out to the higher hierarchy Bar charts horizontal and vertical Brian: When hover on the left column, the vertical bars are not helpful without showing the name of the lists corresponding to the lists. Brian: Add the GC and…
Call length: 30 minutes Participants (those who have spoken): Emily, Kai, Zan, Greg, and Shufei Here is the prototype of the integrated Genome summary http://ec2-52-39-239-146.us-west-2.compute.amazonaws.com:3000/genome_summaries/17-Org12_by_Lists12#color=nightrider&cellsize=14 Rough, still have some issues to work out. TSV generator (Javascript code on the front end) has been optimized Reduced the number of loops in the code. More detailed description in…