Post binning analysis of genomic data
Genome summary facilitates the analysis of organisms by creating a table view of selected organisms against curated or keyword-based lists of genes (universal lists and user-created lists) representing metabolic functions or other biologically relevant facts. Below are the steps for making a genome summary. Step 1: Genome Summary Page On the top menu, click on the Genome Summary link to…
One of the primary analysis tools in ggKbase is the Lists tool. Lists are collections of features / genes that match a set of search terms, which often try to capture entire metabolic pathways, e.g. Glycolysis. Lists are dynamic because they change when data in ggKbase is updated, e.g. new set of annotations, user-created notes. Lists contents can be visualized…
Universal lists are created by ggKbase (not individual users) based on keywords that are searched against all the projects in ggKbase. They are currently only accessible via Genome Summary. And user permissions and access rights may affect whether your accessibility to these lists. So, as you follow the instruction on creating a genome summary, you will need…
